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SRX6750209: Genome sequencing of Treponema denticola: wildtype and motility mutants
1 ION_TORRENT (Ion Torrent PGM) run: 329,827 spots, 98.1M bases, 52.8Mb downloads

Design: Briefly, 1 microgram of T. denticola genomic DNA was fragmented to ~400 bp using a Covaris M220 Focused-ultrasonicator (TrendBio, Australia). A 1 microlitre aliquot of sheared DNA was visualized using a LabChip GX Touch 24 Nucleic Acid Analyzer (PerkinElmer, USA) to ensure a peak fragment size of 400 bp. The DNA was end-repaired (Ion Xpress Plus Fragment Library Kit) and purified (Agencourt AMPure XP Kit, Beckman Coulter). Barcoded adaptors were ligated to the DNA and nick-repaired (Ion Xpress Plus Fragment Library Kit; Ion Xpress Barcode Adapters Kit) and then purified again (Agencourt AMPure XP Kit). The labelled library was then size-selected again using the Pippin Prep DNA Size Selection System (Sage Science), aiming for a target-peak size of ~480 bp collected over a specified range. Following sample purification (Agencourt AMPure XP Kit) the concentration of the unamplified library was determined using qPCR (Ion Library TaqMan Quantitation Kit); libraries were pooled in equimolar amounts of 26 pM.
Submitted by: University of Melbourne
Study: The role of Treponema denticola motility in synergistic biofilm formation with Porphyromonas gingivalis
show Abstracthide Abstract
In the human oral cavity Porphyromonas gingivalis and Treponema denticola dominated biofilm communities are associated with the progression and severity of chronic periodontitis and these two species display synergistic virulence in animal models. These two phylogenetically distant bacteria have evolved in close contact over millennia. T. denticola is a motile spirochaete that is adapted to moving through viscous environments whilst P. gingivalis is nonmotile and highly proteolytic. Metabolically they co-operate and partition their environment to avoid competition. In this study we show that the motility of T. denticola is essential for synergistic polymicrobial biofilm development by these species which helps to explain their synergistic virulence in animal models and their intimate association during disease.
Sample: 33520_isogenic_mutant
SAMN12618814 • SRS5300265 • All experiments • All runs
Library:
Name: IonXpress_003
Instrument: Ion Torrent PGM
Strategy: WGS
Source: GENOMIC
Selection: size fractionation
Layout: SINGLE
Runs: 1 run, 329,827 spots, 98.1M bases, 52.8Mb
Run# of Spots# of BasesSizePublished
SRR10012025329,82798.1M52.8Mb2019-12-01

ID:
8892695

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